PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25557.3 Da    PI: 9.1562
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002420.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.4e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien + rqvtfskRrng+lKKA+ELSvLCdaeva+++fs++gklye++s
  Do002420.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALVVFSPRGKLYEFAS 59
                79***********************************************86 PP

2K-box65.61.8e-2278170899
       K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 s +++++ e+ + +++ L k++e L+  +R+llGe+Le++s++eL++Le +Leksl  iR  K++ll eq+++l +ke  l+++n++Lr+k +
  Do002420.1  78 SsKTAQDIEQVKADAEGLAKKLEALEAYKRKLLGEKLEECSIEELHSLEVKLEKSLHCIRGIKTQLLEEQVNKLMEKETTLRKNNEDLREKCK 170
                 3378889999********************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-32380IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002656.88E-43375No hitNo description
PfamPF003192.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2383170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.53985175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYEFASG  60
SVQKTIERYR TNTKDNVSSK TAQDIEQVKA DAEGLAKKLE ALEAYKRKLL GEKLEECSIE  120
ELHSLEVKLE KSLHCIRGIK TQLLEEQVNK LMEKETTLRK NNEDLREKCK NQPPLLLTHA  180
PAAVVTVEDN RPEQNDDAMD VETELYIGLP GRDHRRNKAA AVRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A9e-19385283Myocyte-specific enhancer factor 2A
3kov_B9e-19385283Myocyte-specific enhancer factor 2A
3kov_I9e-19385283Myocyte-specific enhancer factor 2A
3kov_J9e-19385283Myocyte-specific enhancer factor 2A
3p57_A9e-19385283Myocyte-specific enhancer factor 2A
3p57_B9e-19385283Myocyte-specific enhancer factor 2A
3p57_C9e-19385283Myocyte-specific enhancer factor 2A
3p57_D9e-19385283Myocyte-specific enhancer factor 2A
3p57_I9e-19385283Myocyte-specific enhancer factor 2A
3p57_J9e-19385283Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607740.0EU960774.1 Zea mays clone 228490 MADS-box transcription factor 56 mRNA, complete cds.
GenBankEU9625040.0EU962504.1 Zea mays clone 243238 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985919.11e-145PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_004985920.11e-145PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_012698462.11e-145PREDICTED: MADS-box transcription factor 50 isoform X2
SwissprotQ9XJ601e-117MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLQ9FR851e-127Q9FR85_MAIZE; M5 protein
STRINGGRMZM2G171365_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-72AGAMOUS-like 20